Software for visualising GWAS results

Question

[entheologist33]

Does anyone know a good GWAS visualisation package that can be integrated into a website? I've seen a website using this one:

Which looks brilliant. Does anyone know if that is a downloadable package? I'm looking for a package preferably in javascript. I've seen jbrowse but the graphs aren't that nice looking.

[zx8754]

If you don't mind a bit of coding, using R Shiny this should be pretty easy.

Answer 1

[cmdcolin]

Have you seen the gwasviewer plugin for jbrowse? https://github.com/elsiklab/gwasviewer

It doesn't by default view all chromosomes at a time but I made a demo of that here for example in this gist

Disclaimer: developed by me

Answer 2

[shuaichengwang]

@entheologist33, The GWAS visualization may comes from ZBrowse. Check out the following links.

• http://www.baxterlab.org/untitled-cqi0
• https://peerj.com/articles/cs-3.pdf
• https://github.com/baxterlabZbrowse/ZBrowse