Query processing Illumina Expression Microarray
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7.9 years ago
macmath ▴ 170

I am new to this analysis and would like your suggestions

The description about the data: llumina Expression Microarray (Package could be used Lumi / Beadarray according to my search)

Illumina HumanHT-12_v4_BeadChip Array was used

Illumina HumanHT-12_V4_0_R2_15002873_B

The contents in Control_probe.txt looks like this

TargetID ProbeID A.AVG_Signal A.Detection Pval B.AVG_Signal B.Detection Pval C.AVG_Signal C.Detection Pval

The contents in ProbeSamples.txt looks like this

PROBE_ID SYMBOL A.AVG_Signal B.AVG_Signal C.AVG_Signal
ILMN_1762337 7A5 0 0 0 ILMN_2055271 A1BG 512.3546 478.2366 436.4901

Kindly suggest me how to process this file systematically or suggest me a workflow

microarray workflow llumina • 1.8k views
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