R package: a circular plot for genetic distance.

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7.9 years ago

Baptiste ▴ 90

Hi everyone,

I have a specific request. I am looking for a R package/function that would allow me to plot a circular graph based on genetics distances between genes.

I have already searched on forums/website but I didn't find a package which matches with what I have in mind.

My data looks like something like this:

G1<-c(Gene1,Gene1,Gene1,Gene1,Gene1)
G2<-c(Gene2,Gene3,Gene4,Gene5,Gene6)
GeneticDistance<-c(0.1,0.24,0.09,0.15,0.05)

I want to show on a circular graph all the genes (column 2th) against the Gene1. The smallest GD the Gene will have with the Gene1, the closest the Gene will be to the Gene1 on the circular plot.

I would like something like this

Thank you for your help. :)

Circular Genetic genes R Distance • 2.6k views

ADD COMMENT • link updated 3.4 years ago by Ram 44k • written 7.9 years ago by Baptiste ▴ 90

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I think you can give circos plot a try circos.ca

ADD REPLY • link 7.9 years ago by 1769mkc ★ 1.2k

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Hi Krushnach80,

Thank you for your reply. Yes but does it work as a package in R ?

ADD REPLY • link 7.9 years ago by Baptiste ▴ 90

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not R package its a standalone program you can get its alternatives in R but i guess those are not as good and elegant as circos plot..I suppose..

ADD REPLY • link 7.9 years ago by 1769mkc ★ 1.2k

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