DiffBind read-in narrowPeak file
0
1
Entering edit mode
7.9 years ago
rbronste ▴ 420

Trying to read in .csv of BAMs and narrowPeak files in following format into DiffBind:

SampleID Tissue Factor Condition Treatment Replicate bamReads ControlID bamControl Peaks PeakCaller

MB1 RTFR1 ER MALE none 1 296834SamtoolsRmDup.sorted.bam N/A N/A 296834_peaks.bed raw

Getting the following error:

MB1 RTFR1 ER MALE none 1 raw Error in Summary.factor(c(1L, 11112L, 22223L, 33334L, 38824L, 39935L, : ‘max’ not meaningful for factors

Wondering what can be done?

ChIP-Seq R • 2.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 2146 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6