error while using awk script to extract information about intron length from gff file

Question

[Bioinfonext]

I am using this script to extract intron length information but showing some error.

Script: https://github.com/nathanweeks/scripts/blob/master/intron-length.awk

GFF File: (Rs.1.0.Gene)

http://radish-genome.org/Data_resource/

Error: awk intron-length.awk TYPE=CDS Rs_1.0.Gene.LFY.gff

awk: cmd. line:1: intron-length.awk

awk: cmd. line:1: ^ syntax error

Answer 1

[gangireddy]

make intron-length.awk into executable file

chmod +x intron-length.awk

then run the command as

./intron-length.awk TYPE=CDS Radish_V123_Gene.LFY.gff