DNA-seq Breast Cancer dataset

Question

[pingEde]

Hello!

I am trying to develop a pipeline for my breast cancer data (I have DNA-seq data from normal/tumor samples) and I would like to test it with another breast cancer dataset that also include the information of the validate variants, in order to see how many FP/FN/TN/TP I will find.

Is such dataset available?

Thank you in advance

Best regards

[zizigolu]

this paper has used a gold standard for validation of GRNs

DOI: 10.1186/gm340

they used https://static-content.springer.com/esm/art%3A10.1186%2Fgm340/MediaObjects/13073_2011_342_MOESM2_ESM.TXT as their reference network

[pingEde]

thank you for your answer and your help, but I need DNA-seq data, not Gene expression...