Entering edit mode
7.9 years ago
sidwell
▴
10
Hi, I'm trying to do an aggressive tagging on 1000G datas with a list of markers
java -jar Haploview.jar -n
-out output
-plink chr1.ped
-map chr1.map
-info info_file
-minMAF 0.1
-aggressiveTagging
-includeTagsFile list_markers.txt
-tagrsqcutoff 0.7
I don't have any error when I execute the command but I don't have any output file created neither log file. I know it is running because it takes time and if I give a fake file instead of my real files, it returns an error. So I believe it's working but I can't have any output.
Thanks for any help.
Did you manage to get the output for the tags? If so, would you mind to share? Thanks