SNPRelate data file

Question

[moithuti]

How does one generate a SNPRelate data file? I am try to plot PCA output with software that takes in SNPRelate and EIGENSTRAAT files, but can't seem to get it to take in a gds file, which is what I assume the documentation means when it says a SNPRelate data file.

Answer 1

[Ahill]

Instructions to create a GDS file: http://corearray.sourceforge.net/tutorials/SNPRelate/#create-a-gds-file-of-your-own