Building a ChipSeq and RNASeq pipeline using Biojava

Question

[benjyrolls]

Hi

I have just come across Biojava and must say its very impressive however, am wondering if its possible to build a complete RNASeq and ChipSeq pipeline program using BioJava and JavaFX. is this feasible?

Also, couldn't find much material on Bio java and these NGS Technologies. can someone suggest a good link or tutorial for this.

Thanks in Advance

Ben

[igor]

How can you call any language or framework impressive if you can't evaluate whether it solves your particular problem?

[benjyrolls]

Well you are right Igor but compared to other languages its the closest to what i need.

[WouterDeCoster]

Please use ADD REPLY to answer to earlier comments, as such this thread remains logically structured and easy to follow.

Answer 1

[andreas.prlic]

here a link to the biojava tutorial, that explains a little about how to work with sequences:

https://github.com/biojava/biojava-tutorial/blob/master/core/sequences.md