How does RNA-SeQC calculate the "Mean CV" value?
0
0
Entering edit mode
7.8 years ago
Lina F ▴ 200

I took a look at the journal article and it specifies:

Mean coefficient of variation: the mean coefficient of variation across all transcripts.

Source: https://doi.org/10.1093/bioinformatics/bts196

Note that I wasn't able to actually look at the supplementary data since the link in the article never resolved (if someone has the supplementary data, let me know!)

My question is, how is this number calculated? I assume it is calculated from the average coverages of the transcripts. From there I could calculate the standard deviation and average of those numbers and calculate the coefficient of variation that way.

Is this the right approach?

RNA-Seq qc coefficient of variation • 1.8k views
ADD COMMENT

Login before adding your answer.

Traffic: 2533 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6