Entering edit mode
7.8 years ago
thyleal
▴
160
everyone.
I'm analyzing a two-channel microarray following an example from Bioconductor Case Studies book. I'm stuck in this error:
invalid class “NChannelSet” object: featureNames differ between assayData and featureData Does anyone know how to fix it?
The line that resulted in the error is:
assayData(NORM_dat) = assayDataNew(A=(r+g)/2, M=r-g)
Some info on my objects:
class(NORM_dat)
[1] "NChannelSet"
attr(,"package")
[1] "Biobase"
[1] "AnnotatedDataFrame"
attr(,"package")
[1] "Biobase"
Thank you so much!
Thyago
R session
R version 3.3.2 (2016-10-31)
Platform: i386-w64-mingw32/i386 (32-bit)
Running under: Windows >= 8 x64 (build 9200)
locale:
[1] LC_COLLATE=Portuguese_Brazil.1252 LC_CTYPE=Portuguese_Brazil.1252
[3] LC_MONETARY=Portuguese_Brazil.1252 LC_NUMERIC=C
[5] LC_TIME=Portuguese_Brazil.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] hexbin_1.27.1 vsn_3.42.3 geneplotter_1.52.0
[4] annotate_1.52.1 XML_3.98-1.5 AnnotationDbi_1.36.2
[7] IRanges_2.8.1 S4Vectors_0.12.1 lattice_0.20-34
[10] marray_1.52.0 limma_3.30.11 GEOquery_2.40.0
[13] Biobase_2.34.0 BiocGenerics_0.20.0
loaded via a namespace (and not attached):
[1] RColorBrewer_1.1-2 preprocessCore_1.36.0 digest_0.6.12
[4] R6_2.2.0 scales_0.4.1 assertthat_0.1
[7] grid_3.3.2 bitops_1.0-6 httr_1.2.1
[10] zlibbioc_1.20.0 RSQLite_1.1-2 munsell_0.4.3
[13] tibble_1.2 affy_1.52.0 DBI_0.5-1
[16] labeling_0.3 KernSmooth_2.23-15 ggplot2_2.2.1
[19] BiocInstaller_1.24.0 plyr_1.8.4 gtable_0.2.0
[22] colorspace_1.3-2 RCurl_1.95-4.8 tools_3.3.2
[25] affyio_1.44.0 xtable_1.8-2 lazyeval_0.2.0
[28] memoise_1.0.0 Rcpp_0.12.9
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