DMAP for RRBS generate blank output

Question

[hxlei613]

Hello everyone! Lately I've been using DMAP to analyse my RRBS. Trimming(trim_galore), mapping(bismark) all seem fine. DMAP works well with test data supplied by DMAP. However when I use my raw bam generated by bismark, DMAP doesn't generate any output and there is no error message.I don't know what happened. Then I tried to sort or bam->sam conversion,it's still the same. I totally followed the prosedure supplied by author.

Thanks for any help!

[iraia.munoa]

Hi! Did you find the pipeline to follow for the DMAP tool? I am in the same situation as you, when trying to use it. Did you finally find any other tool easy to use? Thanks!!