Any tools to detect lncRNAs from RNA-seq data?

Question

[arash.iranzadeh1980]

Hi,

I have a set of RNA-seq data, extracted from different conditions plus the genome, the transcriptome and the genome annotation. I would like to detect lncRNA from RNA-seq data. Any tool available for this?

[Manvendra Singh]

If you already have annotations for lncRNA then just calculate its expression by using RSEM

If not then you'd have to run Cufflinks as RABT assembly

Answer 1

[EagleEye]

Try this pipeline.

A: Any One please provide protocol for Analysing long noncoding RNA illumina NGS da