Is there an C++ tool to implement GATK ?
0
0
Entering edit mode
7.8 years ago
winter_li ▴ 60

HI , I am familiar with C++, so is there a tool to implement GATK using C++ ?

Best!

GATK genome SNP next-gen • 2.1k views
ADD COMMENT
4
Entering edit mode
system("java -Xmx5g -jar GenomeAnalysisTK.jar");
ADD REPLY
0
Entering edit mode

What do you mean with "implement"?

ADD REPLY
2
Entering edit mode

That should mean "re-code" but we have no additional context :)

ADD REPLY
0
Entering edit mode

That's what it means, but I don't think it's what OP means :-)

ADD REPLY
0
Entering edit mode

HI, It' means to re-write GATK to use C++ or other language.

ADD REPLY
0
Entering edit mode

GATK is a set of numerous tools using map/reduction of data. Some tools already exist as a C++ program (e.g: SelectVariants can be compared to bcftools view ).

ADD REPLY

Login before adding your answer.

Traffic: 3073 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6