IGV white read color meaning
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7.7 years ago
biotech ▴ 570

I know red means mapped to sense strand and that blue means mapped to antisense.

What about white?

IGV • 5.1k views
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As far as I know those colours can be adjusted by the users, but I think the default for white/light grey is mapping quality of 0. You could check this easily by checking the mapping quality of the white reads...

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