Question

human geneome alignment RNAseq

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7.7 years ago

joerodger2017 ▴ 20

I have an RNA-seq data and am trying to calculate how many read align to rRNA where can I find the file of rRNA gene to align any other pointer?

RNA-Seq • 1.5k views

ADD COMMENT • link updated 7.7 years ago by shunyip ▴ 250 • written 7.7 years ago by joerodger2017 ▴ 20

score 0 · Answer 1 · 2017-03-01

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7.7 years ago

GenoMax 147k

Take a look at this post: A: entire human rDNA

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score 0 · Answer 2 · 2017-03-01

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7.7 years ago

shunyip ▴ 250

This teaches you how to create a gene annotation file with rRNA in it.

In short, in UCSC table browser, choose "All Tables" under "group" and choose "rmsk" under "table".

ADD COMMENT • link 7.7 years ago by shunyip ▴ 250