Best program to estimate genetic divergences?

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7.7 years ago

enrightnm • 0

I would like to estimate genetic divergence between sister taxa using HKY model. I have 22 different species (11 sister taxa pairs) and am using mitochondrial ND2 marker. I have a total of 135 sequences. Multiple sequences for each species, but sample size varies. Any advice on best program to use?

Thanks in advance!

genetic-distance program sequence • 1.8k views

ADD COMMENT • link updated 19 months ago by Ram 44k • written 7.7 years ago by enrightnm • 0

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Hello enrightnm!

It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?p=204952

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLY • link 7.7 years ago by WouterDeCoster 47k

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Take a look at MEGA.

ADD REPLY • link 7.7 years ago by GenoMax 147k

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Unfortunately MEGA doesn't have the HKY model, but has other models. Thanks though!!

ADD REPLY • link 7.7 years ago by enrightnm • 0

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