Entering edit mode
7.7 years ago
nickp60
▴
60
Does anyone have a handy method for making a fasta header comply with the UniProt header specifications? http://www.uniprot.org/help/fasta-headers
In particular, I would like to reformat the output of a metagenomic Prokka analysis. I am perfectly happy py with using dummy values for "sequence version" or "protein evidence" fields. Thanks in advance!
What do your source fasta headers look like?
A typical fasta header from a Prokka run looks like:
>ABX_00001 Protoporphyrinogen IX dehydrogenase [menaquinone]where
ABX_00001is the locus tag and the rest is the description