Mugsy alignment of 2 genomes

1

Entering edit mode

7.7 years ago

martha ▴ 10

Hello =)

I'm new at Mugsy.

when I write the following command:

mugsy --directory ./output --prefix Dsub_Dmel_alignment Scaffolds_chcu_soapdenovo2_L3P8_K47.scafSeq dmel-all-chromosome-r6.14.fasta

I get this error:

 Parsing sequences for Scaffolds_chcu_soapdenovo2_L3P8_K47  num_seqs:22344
 Parsing sequences for dmel_all_chromosome_r6  num_seqs:1
 Can't find species 211000022278256 type=golden_path_region; loc=211000022278256 at /data3/mugsy_x86-64-v1r2.3/mugsy line 501.

What this means? Anyone can help me understand why I have this error?

Thanks, marta

genome alignment • 2.3k views

ADD COMMENT • link updated 4 months ago by skoplik • 0 • written 7.7 years ago by martha ▴ 10

1

Entering edit mode

It would help to add context. What command are you running when you get this error?

ADD REPLY • link 7.7 years ago by GenoMax 147k

0

Entering edit mode

I know this is super duper old, but did anyone find a fix for this? I am having the same issue.

ADD REPLY • link 4 months ago by skoplik • 0

Login before adding your answer.