miRNA target prediction tool

Question

[dentepre]

Hi,

I'm looking for a microRNA target prediction tool, which allow me to choose a type of complementarity. For example, I want to find out only microRNA-mRNA pairs, in which not only a seed region, but also a rest of nucleotides are complementary.

thanks dentepre

[Buffo]

For entire interaction you can use bowtie or bowtie 2. Mapping miRNAS to transcriptomic data.

[chengrui7]

I think you can search for global alignment and local alignment tools. I used bio python package for this kind of jobs.