How to extract the numerical expression values for plotting time series curves for this NCBI GEO dataset using the GPL19046 Yeast_WG chip / platform?
I would like to plot the mRNA expression time series curves based on the data of the following NCBI GEO dataset.
Series GSE60112 The title of this dataset is:
Time-series DNA occupancy during the yeast respiratory cycle
The URL of this dataset is:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60112
The citation of the publication, which goes along with this dataset, is:
Cornelia Amariei, Rainer Machné, Viktor Stolc, Tomoyoshi Soga, Masaru Tomita and Douglas B. Murray. Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program. Microbial Cell, 2014, Vol. 1, No. 9, pp. 279 – 288
This publication is freely available at http://microbialcell.com/researcharticles/time-resolved-dna-occupancy-dynamics-during-the-respiratory-oscillation-uncover-a-global-reset-point-in-the-yeast-growth-program/
My problem is that the platform / chip seems to be
GPL19046 Yeast_WG chip
What do I need to do to extract the numerical gene expression values from this dataset, which are most meaningful for plotting time series curves?
Thanks a lot
Thomas
