List of GO terms that are overrepresented in a geneset

Question

[o3964fn4n]

Hi,

I have a file with some geneIDs and I want to make a list of GO terms that are overrepresented in the geneset, consisting of the significant hits. I have used the DAVID website, and chose my geneIDs that were significant as the first list to paste in. Then to have a correct background I chose the non-significant geneIDs from my list. When I do this, I click on "Functional annotation clustering" to see the analysis, but how can I get a list of the GO terms then?

Do I make my own list in a Word document or can I make a list online ?

Thanks in advance

[WouterDeCoster]

Hi o3964fn4n,

Don't forget to follow up on your previous threads:

• Make a sequence logo from information in a file?
• Where can I get hg19.omimAvSnp and hg19.omimAv tables?

If an answer was helpful it's most appropriate to upvote it. If the answer resolved your question you should mark it as accepted.

Cheers,
Wouter

[GenoMax]

Looks like you advice was followed with at least one of the threads :)

[WouterDeCoster]

That's a nice start!

[GenoMax]

Try: GeneSCF (Gene Enrichment Tool): Advice to users
Developer of package @EagleEye participates here regularly.

Answer 1

[EagleEye]

H o3964fn4ni,

GeneSCF will be the convenient solution for you to test multiple list. But it is command line tool, not web based.

For presentation of data check these posts,

A: Deferentially expressed genes