ploting a network of mRNAs and miRNAs
1
0
Entering edit mode
7.7 years ago
zizigolu ★ 4.3k

hi,

I have expression profiles of 192 miRNAs and experimentaly validated targets in two separate txt files, how I can plot which miRNA connected with which mRNA via a network??? I tried parmigene R package but depending on miRNAs and mRNAs placed in row network contains only miRNAs or mRNA. then what to do please???

miRNA target R • 2.0k views
ADD COMMENT
1
Entering edit mode
7.7 years ago

This sounds like a visualisation problem, so Cytoscape seems appropriate, unless you want to stick with R, in which case I'd suggest iGraph.

ADD COMMENT
1
Entering edit mode

I would recommend igraph as well and found this tutorial extremely useful: http://kateto.net/netscix2016

ADD REPLY

Login before adding your answer.

Traffic: 3086 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6