Entering edit mode
7.7 years ago
dp0b
▴
80
Hi
Simple question but just want to clarify how to estimate recombination rate from a genetic linkage map for a region.
Recombination rate is cM/Mb so for a linkage map like below, so recombination for each snp is cM-previous cM/((position-prev position)/1000000)
If I wish to estimate recombination rate per Mb, is it correct to take the average of the recombination rate in each Mb?
SNP Chr cM bp_position recomb_rate
s64715327.1 1 0 120098 0
s64803054.1 1 0 315497 0
s88143.1 1 0.073 401196 0.8518
s09912.1 1 0.073 489045 0
s64747.1 1 0.204 748143 0.5056
s420114.1 1 0.244 792698 0.8977
s537224_X.1 1 0.244 912507 0
s48804.1 1 0.244 1155400 0
s40172.1 1 1.108 1245222 9.619
s26718.1 1 1.108 1390945 0