Looking for phylostratigraphy programs or protocols

Question

[jmah]

Does anyone know of a program to do phylostratigraphic analyses? Or do people do that manually? I did come across ComPhy by I. Pederoso, but that seems to be unpublished.

Thanks!

[WouterDeCoster]

Hello jmah!

It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?t=75140

This is typically not recommended as it runs the risk of annoying people in both communities.

[jmah]

Thanks for letting me know! I didn't know if there was extensive overlap of users between both of these sites.

Answer 1

[jmah]

Well, it seems that there isn't one yet. There is a server run by Domazet-Loso called Phylostrat that is used to run the analyses, but it does not appear to be open to the public. So.... if any of your bioinformaticists want to give it a shot, let me know!