chipseq data analysis

Question

[praveenhcu131]

can anybody please tell me how to implement the logistic regression on chip seq data after extracting features like distance from tss and peak breadth and peak count

Answer 1

[Carlo Yague]

You can do it in R with the glm function. If you google around, you will find many examples of such regressions.

[praveenhcu131]

please tell me how to give input file

[Carlo Yague]

This is going to be hard if you don't know how to use R because it takes a bit of learning. Alternatively, doing a logistic regression is also possible with Excel.

If you want to stick with R, you can usually load any kind of text data using read.table().