metagenomic profiling and population analysis

Question

[mkh]

Hi all

I would like to do bacterial population metagenomic profiling and population analysis on the RNA-seq data. I have no idea how to this kind of analysis. Is there any suggestion or recommend paper to start with?

Thanks Morteza

Answer 1

[Zev.Kronenberg]

Here's a paper out of my old lab:

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0969-1