convert VCF into bayescan format

Question

[guillaume.rbt]

Hi all,

I am trying to use bayescan on a set of haploid SNPs markers I have on several samples.

To do that I need to convert my multiVCF file into bayescan format.

Would anyone know a way to do that? (I have tried PGDspider but it doesn't work... )

Thanks,

Guillaume

Answer 1

[ivivek_ngs]

You should be able to find your answer here

What I know is a 2 step conversion. VCF -> PGD -> Bayescan

[guillaume.rbt]

thanks, Unfortunately the VCF -> PGD step isn't working, I don't know why