MACS2 extsize parameter problem
0
0
Entering edit mode
7.6 years ago
xd_d ▴ 110

Hi all,

I have a question about the parameters of MACS2?

What does the parameter --extsize with my reads/tags

input reads as treatment.

name /start/end chr1 1 100 +

when i set --extsize 50 then my new read is chr 1 51 ?

I ask because when I call peak on multiple chr1 1 100 +,chr1 1 100 +,chr1 1 100 +

then i get with --exitsize 50 => peak_1 chr1 1 51

But why not peak_1 chr 1 150 ?

please help : )

ChIP-Seq • 1.9k views
ADD COMMENT

Login before adding your answer.

Traffic: 2002 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6