Ideogram Mapview Data For Human Genome Build 37.2

Question

[Alex]

I can't find ideogram file (positions of cytogenetics bands) in the new build of Homo sapiens genome (Build 37.2). In the build 37.1 ideogram file is placed in mapview/ideogram.gz

1. Can I use the ideogram file from 37.1 with build 37.2?
2. What is difference with beetween ideogram.gz and ideogram9606GCF000001305.13XXX files in build 37.1?

[Casey Bergman]

See related question here: What'S The Difference Between Two Versions Of The Same Assembly ?

Answer 1

[Casey Bergman]

You can get these data from the UCSC GRCh37/hg19 Human Genome Database or Browser:

http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz

[Alex]

Thanks, ideorgram is now correct with UCSC data. 37.2 build has shorter chromosomes.

[Alex]

Thanks, ideorgram is now correct with UCSC data.