position of each codon and anti codon on transcriptome

Question

[Sara]

how can I find the list of each codon position on mRNA transcriptome and each position of anti codons on tRNA transcriptome. for example for AAA codon there are more than 300000 position on mRNA transcriptome and the first position is position 230 and the second one is 1630 etc.

[WouterDeCoster]

It's not completely clear what the input data is you have and what you aim to obtain. Can you please elaborate?

[Sara]

I have RNA-seq data and aligned them so now I have bam files. my goal is to count the reads for each tRNA gane at each position in other word I want to count the number of reads for different variants of each tRNA.

[GenoMax]

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