Is it possible to plot a radiation tree with ggtree? how?
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7.6 years ago
Hongru • 0

Is it possible to plot a radiation tree (example below) with ggtree? If so, how? If not possible, are there any other R packages that can automate radiation tree making?

radiation tree

ggtree phylogenetic tree radiation • 2.6k views
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7.6 years ago
Joseph Hughes ★ 3.0k

Use the unrooted tree option:

ggtree(tree, layout="unrooted")

The information you are looking for can easily be found with google search: https://bioconductor.org/packages/devel/bioc/vignettes/ggtree/inst/doc/treeVisualization.html#unrooted

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7.6 years ago
Jake Warner ▴ 840

Non-ggtree answer: You can use APE (analysis of phylogenetics and evolution) to plot an un-rooted tree:

library("ape")
plot(as.phylo(hc), type = "unrooted", cex = 0.6,
 no.margin = TRUE)
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