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7.6 years ago
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I came across this galaxy workflow that was originally used with 454 sequences.
https://usegalaxy.org/u/aun1/p/windshield-splatter
I was wondering if it would also work with Hi-seq data (HiSeq 2500 2x125 PE)
You may want to post over at Galaxy biostar.
That said it may only be appropriate in principal. Would need changes to accommodate for different data.