clustering peptide sequences

Question

[elmira b]

Hi,

Thanks for reading my post.

What would you suggest to use for clustering a large set of peptide sequences with given intensities? Based on my quick search, UCLUST, CD-HIT, AAindex, GibbsCluster do a descent job for sequence alignment . I am interested in reducing the size of the dataset by using the centroids of these sequence clusters.

Thank you so much for your help.