cummeRbund installation error

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7.6 years ago

saj98 ▴ 140

Hello every one

I am installed cummeRbund by using the following commands

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cummeRbund")

As well as I install

sudo apt-get install libcurl4-openssl-dev libxml2-dev

through Linux terminal

When I tried to library cummeRbund, it gave me error (there is no package called cummeRbund)

Does any body have an idea why I am getting his issue ?

Best Shaima

R • 1.8k views

ADD COMMENT • link updated 7.6 years ago by Santosh Anand 5.8k • written 7.6 years ago by saj98 ▴ 140

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Did biocLite("cummeRbund") complete successfully?

And just so our bases are covered, are you using a Linux distribution where apt-get install is supported?

ADD REPLY • link 7.6 years ago by Ram 44k

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Yes, it has done successfully

ADD REPLY • link 7.6 years ago by saj98 ▴ 140

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Take the first output of .libPaths() command inside R. This will be the PATH to a directory. Go to that PATH and check if there is a directory named cummeRbund there. In case not, do a fresh install and post all the messages that biocLite() reports while doing fresh install.

EDIT: In any case, you can do a fresh install and post all the messages reported by biocLite(), then only it is possible to understand if something went wrong

ADD REPLY • link 7.6 years ago by Santosh Anand 5.8k

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