Question

DE analysis using single cell RNA-seq data

1

Entering edit mode

7.6 years ago

Sara ▴ 260

I have single cell RNA-seq data (.sra files) and want to do DE analysis. I have found a lot tools available. do you know what is the most precise one. also I am working with R.

rna-seq • 2.6k views

ADD COMMENT • link updated 5.7 years ago by Jennifer Pham ▴ 450 • written 7.6 years ago by Sara ▴ 260

score 2 · Answer 1 · 2017-05-09

2

Entering edit mode

7.6 years ago

Mike ★ 1.9k

Have a look..

https://www.bioconductor.org/help/workflows/simpleSingleCell/

ADD COMMENT • link 7.6 years ago by Mike ★ 1.9k

score 1 · Answer 2 · 2017-05-08

1

Entering edit mode

7.6 years ago

theobroma22 ★ 1.2k

http://www.rna-seqblog.com/cellview-interactive-exploration-of-high-dimensional-single-cell-rna-seq-data/

ADD COMMENT • link 7.6 years ago by theobroma22 ★ 1.2k

ATpoint · Answer 3 · 2019-03-04

0

Entering edit mode

5.7 years ago

Jennifer Pham ▴ 450

Check this if you want a UI:

ADD COMMENT • link updated 5.7 years ago by ATpoint 85k • written 5.7 years ago by Jennifer Pham ▴ 450