Looking for a bam file with aligned (error corrected) PacBio reads

Question

[William]

I am looking for example PacBio aligned data to have a look at in IGV.

So far I only found PacBio read datasets: https://github.com/PacificBiosciences/DevNet/wiki/Datasets

Are there also PacBio bam files somewhere on the internet that I can download? I don't mind very much which species or sequence type (genome or rna) the data is.

Maybe somebody mapped one of the example read datasets? The human 54x would be the most interesting but any other is also fine.

edit:

I found a bam file with aligned uncorrected PacBio reads against D. melanogaster:

http://bergmanlab.smith.man.ac.uk/?page_id=4

http://bergman.smith.man.ac.uk/data/tracks/dm3/dm3PacBio.bam

However it would be nice to also find a bam file with error corrected PacBio reads aligned against a species.

[cmdcolin]

Links for bergman lab updated

• http://bergmanlab.genetics.uga.edu/?p=2176
• http://bergmanlab.genetics.uga.edu/data/tracks/dm3/dm3PacBio.bam

Answer 1

[Coryza]

Unfortunately I cannot share our data with you. I do hope someone else can help you.