Entering edit mode
7.6 years ago
T
▴
40
Dear community,
I want to get an annotation table of all human, mouse, yeast, fly, worm, .. enzymes:
ENGXXXXX1 Alcohol dehydrogenase
ENGXXXXX2 Reductase
.... .....
Even Yes / No would be fine at this stage:
ENGXXXXX1 T
ENGXXXXX2 T
ENGXXXXX3 F
ENGXXXXX4 F
..... ...
I looked at IntENZ but the information is not integrated into Biomart and the BioPAX format is not quite straight forward to process.
Do you know of any easy way for doing that?
Thanks.
where is this file please ?
ftp://ftp.ebi.ac.uk/pub/databases/intenz/biopax/intenz-biopax.owl.gz
and what is this ENGXXXXX1 ? I cannot see this in your URL
T : Isn't this a better source to parse this information?