Question

Binary to DNA sequence

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7.5 years ago

khn ▴ 140

Hello,

Can anybody please teach me how to convert binary to ATCG?

I have two sets of bed/bim/fam files.

The first files. The sequences are shown as binary.
The second files. These are after imputation of the first files. The sequences are shown as ATCG. Some SNPs in the first files are missing in the second files.

I want to convert binary to ATCG in the first files, using the results of the second files.

Thank you in advance!

SNP genome sequence plink • 4.1k views

ADD COMMENT • link updated 5.9 years ago by zx8754 12k • written 7.5 years ago by khn ▴ 140

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See here and here.

ADD REPLY • link 7.5 years ago by h.mon 35k

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Thank you so much. I have created the vcf files from the second files, but can you please tell me what would be the next step?

ADD REPLY • link 7.5 years ago by khn ▴ 140

score 0 · Answer 1 · 2019-01-17

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5.9 years ago

vishwaas1704 ▴ 30

The script to do it is available at

https://github.com/abhijeetsingh1704/BINARY_to_DNA/blob/master/BINARY_2_DNA.sh

ADD COMMENT • link 5.9 years ago by vishwaas1704 ▴ 30

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I don't think this is relevant.

ADD REPLY • link 5.9 years ago by zx8754 12k