Question

Big Data Translation

0

Entering edit mode

7.5 years ago

l.souza ▴ 80

What tool can I use to translate a big amount of sequences of DNA into Amino Acids?

translation sequences genome proteome dna • 1.8k views

ADD COMMENT • link updated 7.5 years ago by GenoMax 147k • written 7.5 years ago by l.souza ▴ 80

1

Entering edit mode

Do you need to simply translate DNA into amino acids, or do you need to predict coding regions in transcripts? TransDecoder does the second task.

ADD REPLY • link 7.5 years ago by h.mon 35k

0

Entering edit mode

Simply translate DNA into amino acids.

ADD REPLY • link 7.5 years ago by l.souza ▴ 80

score 3 · Accepted Answer · 2017-05-25

3

Entering edit mode

7.5 years ago

GenoMax 147k

EMBOSS TransSeq or SixPack.

For a lot of data you would want to download EMBOSS for running it locally.

ADD COMMENT • link 7.5 years ago by GenoMax 147k

0

Entering edit mode

Don't you know any local software that runs in Windows?

ADD REPLY • link 7.5 years ago by l.souza ▴ 80

1

Entering edit mode

EMBOSS for windows, here:

ftp://emboss.open-bio.org/pub/EMBOSS/windows/mEMBOSS-6.5.0.0-setup.exe

ADD REPLY • link 7.5 years ago by h.mon 35k

0

Entering edit mode

that runs in Windows?

If that is an important requirement for you then you should mention that in your question.

In addition, if the answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted. Upvote|Bookmark|Accept

ADD REPLY • link 7.5 years ago by WouterDeCoster 47k