Getting Protein GIs from a Nucleotide Range

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7.5 years ago

13dsc • 0

I am wondering how to get the GI number of the proteins flanking a protein of interest based on a certain range.

For example I have a GI number, SFC05498, and I want to get all of the other proteins that are located 30kb on either side of this protein.

Cheers

gene blast biopython python • 1.3k views

ADD COMMENT • link 7.5 years ago by 13dsc • 0

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SFC05498 doesn't look like a NCBI gi ( gis are deprecated by the way)

ADD REPLY • link 7.5 years ago by Pierre Lindenbaum 164k

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my bad I guess the correct question would be from accession numbers? I was also wondering what would I do for accession numbers with multiple nucleotide entries ex. non redundant protein sequences.

ADD REPLY • link 7.5 years ago by 13dsc • 0

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Seems like your example GI number belongs to EMBL id. EBI id map tool

ADD REPLY • link 7.5 years ago by Pallab Bhowmick ▴ 20

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