hg19 transcript mapping or exon overlap

Question

[bioguy24]

Is there a tool or script that can map or identify what exon the current version of an hg19 transcript overlaps with? I guess like UCSC genome browser but for just uses the coordinates without visualizing them. Thank you :)

For example.

 Transcript        Exon
 NM_001127222.1     10

[WouterDeCoster]

I'm not sure, but do exon numbers make sense in the context of alternative splicing? There is no unambiguous way to number exons if some are optional.

[cindyz]

Do you mean you want to identify all exons of a transcript? If so you can use ucsc table browser (go to ucsc website -> tools -> table browser -> select clade: mammal; genome: human; assembly: hg19; group: genes and gene predictions; leave track and table as default -> either download genome-wide info or upload identifier, in your case NM_001127222 -> hit get output -> exon start and end positions are displayed as one of the default fields)

[bioguy24]

Thank you all for your help :)

[pjalali46]

WouterDeCoster .....i must talk to yuo...my email: [e-mail].

[WouterDeCoster]

I have moved your post to a comment. Please use ADD REPLY to answer to earlier reactions.
If you have something to discuss or ask feel free to do it in this forum, we prefer to keep all conversation open so everyone can share their ideas and experience.