Collect quality information from raw sequencing data

Question

[sai]

Hi,

I have multiple illumina WGS data and I would like to collect quality information from all samples. I know fastQC report tells the quality information by producing graphs, but I want to summarise the quality scores in number like "% Bases Q ≥ 30 = 80" since I have multiple samples.

I searched for programs which can do this, but I couldn't find. Does anyone have any idea on this? or better idea to summarise quality information of raw sequencing data?

Answer 1

[shenwei356]

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report

[sai]

Thank you for your suggestion! I will definitely try that.