How to run Maple-2.3.0 (genome.jp) on the command-line?

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7.5 years ago

jolespin ▴ 150

I would like to use: http://www.genome.jp/tools/maple/

I have 33 draft genomes and I want to calculate the module completeness ratios for all of the draft genomes. I've been doing them individually through the browser but it's taking a long time. It also crashed when I ran too many at the same time. Is there anyway to to download this onto my local machine/server to run the analysis? My data is in the form of protein fasta files.

kegg modules functional fasta maple • 1.9k views

ADD COMMENT • link 7.5 years ago by jolespin ▴ 150

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It seems Maple is not available for download. Better contact the authors to be sure.

ADD REPLY • link 7.5 years ago by h.mon 35k

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"We are sorry, but the stand-alone version of MAPLE is not provided." :( Copy and paste life . I might try to make an apple script tool. Do you know of anything else that can achieve this type of module completion ratio? I have been using genome properties but the kegg ids are so nice to work with.

ADD REPLY • link 7.5 years ago by jolespin ▴ 150

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In addition to osascript, you could also use xdotool to perform automation.

ADD REPLY • link 7.3 years ago by AK ★ 2.2k

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