Entering edit mode
7.5 years ago
Jacob
▴
10
For template_type and template_length, this is all I can really find on them
-template_type <String, `coding', `coding_and_optimal', `optimal'>
Discontiguous MegaBLAST template type
-template_length <Integer, Permissible values: '16' '18' '21' >
Discontiguous MegaBLAST template length
I don't really know what they are though and I don't know what differences setting optimal or coding will do. I also don't know the benefit of selecting 16 18 or 21 as length
This is all I can find on the best hit options
-best_hit_overhang <Real, (>0 and <0.5)>
Best Hit algorithm overhang value (recommended value: 0.1)
-best_hit_score_edge <Real, (>0 and <0.5)>
Best Hit algorithm score edge value (recommended value: 0.1)