Dear all, I have to do genome annotation for my genomic data (Aspergillus flavus). I am interested in funannotate pipeline but the installation is really hectic. When i install with brew for augustus it shows brew install augustus
Makefile:31: recipe for target 'filterBam' failed
make: * [filterBam] Error 1
make: Leaving directory '/tmp/augustus-20170612-24621-1wlkux3/augustus-3.2.2/auxprogs/filterBam/src'
READ THIS: https://github.com/Linuxbrew/brew/blob/master/docs/Troubleshooting.md#troubleshooting
Please do not report this issue to Homebrew/brew or Homebrew/core, which support macOS only.
/home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:226:in `raise_api_error': curl failed! (GitHub::Error)
curl: (7) Failed to connect to ftp.hgc.jp port 1080: Connection timed out
curl: (3) <url> malformed
from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:184:in open'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:233:in
issues_matching'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:272:in issues_for_formula'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:368:in
fetch_issues'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:364:in issues'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:419:in
dump'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/brew.rb:131:in rescue in <main>'
from /home/praveenkumar/.linuxbrew/Library/Homebrew/brew.rb:30:in
<main>'
How to overcome from this? please help me
What about this?
The protocol itself they have given like that. I will try
working behind a proxy ?
sorry for the late reply. yes, you are right i am using proxy. why? will it create any problem if i use proxy?