R script - Error: protect(): protection stack overflow

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7.4 years ago

Chen Mor • 0

Hey everyone! I've been trying to run an R script for the past couple of days, but unfortunately, I always end up getting the following error: Error: protect(): protection stack overflow

The script runs the t-SNE algorithm over a large matrix,and probably fails to run due to a memory limit. I've tried to increase the max-ppsize parameter, but no luck.

Any ideas?Thanks!

tsne pca r bigdata • 7.3k views

ADD COMMENT • link 7.4 years ago by Chen Mor • 0

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It would not be possible to find a solution to a problem without actually looking at the problem. Posting the link to script will help find a reason for this error.

ADD REPLY • link 7.4 years ago by venu 7.1k

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cross-posted on stackoverflow. It's not a good practice to cross-post. https://stackoverflow.com/questions/44674132/r-script-error-protect-protection-stack-overflow

Anyway did you try on a small subset of your data ? What is the size/dimension of your data ?

ADD REPLY • link 7.4 years ago by Nicolas Rosewick 11k

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