how do I know there is alternative transcript switch in RNA-seq
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7.4 years ago
bxia ▴ 180

I know cuffdiff2 could detect transcripts expression level.

But what is the criteria that I could say that there is transcript switch?

Let's say two transcript, A, B, and two conditions.

What is the best way to conclude there is a switch, is there a gold standard?

Thanks,

RNA-Seq • 926 views
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