Script to run on linux for assembly on clusters

Question

[dhiren]

Hi

What Script do i run for abyss to do an assembly on multiple machines? I have installed DIDA so i can can so an assembly on a cluster but im not sure how to call it in the script. I am using a linux machine

Regards

Answer 1

[DG]

Well, it partially depends on your cluster. Since you have DIDA installed, the abyss command itself has a dida subcommand you can use as per the manual and documentation. There does appear to be an abyss-dida wrapper script (abyss-dida on github) but I'm not sure exactly how it is used as I haven't used this approach before. But in general, you probably have some things to do or set up depending on what scheduler the cluster uses. You should speak to whoever runs your cluster.