Entering edit mode
7.4 years ago
bandanaschapagain
▴
40
Hi, I used Lowfreq to get the Single Nuclwotide Polymorphism (SNPs) for my plant viral dataset with this command: lofreq call -f ref.fa -o vars.vcf aln.bam I reviewed Biostar, Lowfreq FAQ to understand the output. I am not able to have a clear picture of it. I hope to get some informations over this. Regards, Bandana
I really could not figure it out about the output. If only anyone can help me.